A new dichotomic algorithm for the uniform random generation of words in regular languages16 août 2012Johan Oudinet, Alain Denise, Marie-Claude Gaudel, Theoretical Computer Science (2012), DOI 10.1016/j.tcs.2012.07.025
A stochastic automaton shows how enzyme assemblies may contribute to metabolic efficiency25 mars 2008By Patrick Amar et Al.
BMC Systems Biology 2008, 2:27
Automated motif extraction and classification in RNA tertiary structures29 novembre 2008Mahassine Djelloul and Alain Denise. RNA December 2008 14: 2489-2497.
Automated prediction of three-way junction topological families in RNA secondary structures11 février 2012Alexis Lamiable, Dominique Barth, Alain Denise, Franck Quessette, Sandrine Vial, Éric Westhof.
Computational Biology and Chemistry 37 (2012) 1–5
Average complexity of the Jiang-Wang-Zhang pairwise tree alignment algorithm and of a RNA secondary structure alignment algorithm01 juin 2010Claire Herrbach, Alain Denise and Serge Dulucq. Theoretical Computer Science 411 (2010) 2423-2432.
Cell-cell communication enhances the capacity of cell ensembles to sense shallow gradients during morphogenesis09 février 2016D. Ellison, A. Mugler, M.D. Brennan, S.H. Lee, R.J. Huebner, E.R. Shamir, L.A. Woo, J. Kim, P. Amar, I. Nemenman, A.J. Ewald and A. Levchenko
Chromosome Replication in Escherichia coli: Life on the Scales. Vic NORRIS and Patrick AMAR29 octobre 2012Life 2012, 2(4), 286-312; doi:10.3390/life2040286
Computer‐aided biochemical programming of synthetic microreactors as diagnostic devices27 avril 2018Alexis Courbet, Patrick Amar, Francois Fages, Eric Renard, Franck Molina
Mol Syst Biol. (2018) 14: e7845
DOI 10.15252/msb.20177845
Computing with Synthetic Protocells13 mai 2015Alexis Courbet, Franck Molina and Patrick Amar
Coverage-biased random explo-ration of large models and application to testing27 mars 2011A. Denise, M.-C. Gaudel, S.-D. Gouraud, R. Lassaigne, J. Oudinet S. Peyronnet, STTT: Int. Jal on SOFTWARE TOOLS FOR TECHNOLOGY TRANSFER, DOI: 10.1007/s10009-011-0190-1
Exploration Uniforme de très grands modèles06 novembre 2007Un nouvel algorithme permet de tirer uniformément des traces dans de très grands modeles de systèmes parallèles.
GenoQuery: a new querying module for functional annotation in a genomic warehouse01 juillet 2008Frédéric Lemoine, Bernard Labedan and Christine Froidevaux in Bioinformatics, 2008, 24(13):i322-9
Le logiciel VARNA à l'honneur15 juillet 2011Le logiciel VARNA est distingué dans le rapport scientifique 2010 du CNRS.
Novel insights regarding the sigmoidal pattern of resistance to neomycin conferred by the aphII gene in Streptomyces lividans.02 mai 2013Nicolas Seghezzi, Marie-Joelle Virolle and Patrick Amar
Sensor potency of the moonlighting enzyme-decorated cytoskeleton: the cytoskeleton as a metabolic sensor26 février 2013Vic Norris, Patrick Amar, Guillaume Legent, Camille Ripoll, Michel Thellier and Judit Ovádi
The Average Complexity of Tree Alignment28 janvier 2008Nous avons démontré que la complexité moyenne de l'algorithme d'alignement d'arbres de Jiang, Wang et Zhang (1995) est en O(n^2).
The Mimic Chain Reaction. V. Norris, A. Thierry, P. Amar, B. Holland, F. Molina05 décembre 2012J Mol Microbiol Biotechnol 2012;22:335-343 (doi: 10.1159/000345328)
Tree decomposition and parameterized algorithms for RNA structure-sequence alignment including tertiary interactions and pseudoknots07 août 2012Philippe Rinaudo, Yann Ponty, Dominique Barth, and Alain Denise. WABI 2012.
